Variant Interpreter

Job Functions Duties Responsibilities and Position Qualifications:

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Quality is in our DNA -- is it in yours

You are a superhero when it comes to patient specimens. Youve got problem-solving instincts a passion for patient care and the drive to keep things running smoothly. Youre also looking for great benefits the support of an all-star team and an opportunity to grow your career.

Join our front line of #HealthcareHeroes! Our mission is to advance the health and wellbeing of our communities as a leader in clinical laboratory solutions.

Location: Rye Brook NY

Days: Monday - Friday

Full-time: Benefit Eligible

Our ThyroSeq Laboratory located in Rye Brook NY has an opening for a Clinical Variant Interpreter.

The Clinical Variant Interpreter will function within a team of Interpreters/Curators in the interpretation of the ThyroSeq results obtained from clinical DNA and RNA specimens retrieved
from thyroid FNAs FFPEs Cytospins and cytology smears that were subjected to next generation sequencing (NGS) assay to better manage and prognosticate patients with a thyroid
nodule. This Masters and/or PhD level scientist will use manual and automated methods in a team environment and follow established policies and procedures to make detailed
genomics observations interpretations and analyses of the NGS data while maintaining a high level of tumor biology expertise through familiarity with scientific literature as he/she
generates NGS reports. The scientist will cultivate an excellent working relationship with the Laboratory Director (LD) other interpreters/curators and various teams in the molecular
laboratory genetic counseling LIMS/LIS Integration software engineering data analysis and Bioinformatics groups as they aid the test development and validation of the clinical pipeline of molecular assays and/or research conducted in the lab. The scientist will also participate in writing SOPs for variant annotation and interpretation and QC/QA processes.
He/she will also be involved in the generation of the variant knowledgebase and training of the incoming staff in accordance with the SOPs and based on CAP/CLIA/NYSDOH
regulatory policies and procedures. Although initially the laboratory will focus on the molecular assessment of the thyroid nodules for diagnostic prognostic and management
purposes other oncology testing will be performed in the newly built state of the art SHUSA ThyroSeq Laboratory located at 760 Westchester Rye Brook NY 10573.

In this role you will:

This full -time position requires the ability to use a computer keyboard and communication over phone and video conferencing. Duties may require working outside the normal working hours at times over the weekends and evening especially for STAT cases or when there is a deadline to comply with in the Lab.

Clearly communicate in both written and spoken English with the key clinical staff regarding tumor-profiling results prior to producing clear concise and correct technical documentation.
Efficiently review data (NGS ABI PCR etc.) and approves results according to standard procedures.
Efficiently evaluates and provides assessment of pathogenicity for detected DNA/RNA variants DNA Copy Number Variations (CNV) as well as evaluate expression analysis rendered using the proprietary algorithm.
Timely generates patient reports. On as needed basis assists in the development of procedures for classifying genetic variants per guidelines including AMP/ACMG curation of internal and external databases as well as submission to ClinVar or for publication.
Assists in the training of new staff members and/or other duties as assigned.
Works with PHI on a regular basis; be compliant with HIPAA/PHI privacy rules and complete compliance and security trainings within two weeks of hire.
Advises on design and implementation of quality control (QC) procedures for critical steps and processes.
Write standard operating procedures (SOP) and other lab-related documents when necessary.
Communicate and discuss molecular results with a multidisciplinary team including the LDs bioinformaticians software engineers and lab staff.
Learn and understand the science behind ongoing clinical tasks/research projects that he/she is involved.
Produce high quality and reproducible results to the highest technical standards established by the laboratory

Qualifications:

An MD PhD or a Masters degree in medicine molecular biology tissue or cell or equivalent combination of education and experience.
Minimum of 2 years of clinical curation experience in a CLIA environment with oncology experience being preferred. Solid understanding of genetic variant curation and/or interpretation of clinical relevance based on the AMP and ACMG guidelines of preferentially solid tumors over
hematologic malignancies or germline conditions.
Familiarity with databases tools and resources commonly used in interpretation of genomic data.
Ability to troubleshoot technical and scientific issues either individually or in a team setting. Ability to comprehend complex problems and apply knowledge in a solutions-oriented approach with attention to details and clinical nuances that could be critical in patients management and clinical outcomes.
Organized and efficient to provide exceptionally accurate and high quality of work with ability to thrive in a fast-paced and evolving laboratory environment which would start with the ThyroSeq assay but plans to continue launching other molecular assays as appropriate with the Sonic Healthcares vision.

Company:

Sonic Anatomic Pathology

Well give you:

• Appreciation for your work
• A feeling of satisfaction that youve helped people
• Opportunity to grow in your profession
• Free lab services for you and your dependents
• Work-life balance including Paid Time Off and Paid Holidays
• Competitive benefits including medical dental and vision insurance
• Help saving for retirement with a 401(k) plus a company match
• A sense of belonging were a community!

We also want you to know:

This role will have routine access to Protected Health Information (PHI). Employees will be trained on reasonable safeguards and are expected to maintain strict confidentiality as well as abide by all applicable privacy and security standards. Employees are expected only to access PHI when it is required to fulfill job duties.

Salary range is $90000 - $100000/year offer amounts are determined by multiple factors including candidate location experience and expertise.

Sonic Healthcare USA reserves the right to pay more or less than the posted range. Any difference between actual compensation and the posted range will be based on factors other than race color religion sex (including pregnancy) or national origin.

Scheduled Weekly Hours:

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Sonic Healthcare USA is an equal opportunity employer that celebrates diversity and is committed to an inclusive workplace for all employees. We prohibit discrimination and harassment of any kind based on race color sex religion age national origin disability genetics veteran status sexual orientation gender identity or expression or any other characteristic protected by federal state or local laws.