Postdoctoral Research Fellow in Machine Learning for Genomics, Transcriptomics, and Bioinformatics
Postdoctoral Research Fellow in Machine Learning for Genomics, Transcriptomics, and Bioinformatics
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Job Description
Job Category
Faculty Non BargainingJob Title
Postdoctoral Research Fellow in Machine Learning for Genomics Transcriptomics and BioinformaticsDepartment
Bashashati Laboratory School of Biomedical Engineering Faculty of Medicine (Ali Bashashati)Posting End Date
November 30 2025Note: Applications will be accepted until 11:59 PM on the Posting End Date.
Job End Date
December 31 2027The expected pay for this position is $70000 per year benefits.
AI and Deep Learning for Genomics Transcriptomics and Bioinformatics
Job Summary
The School of Biomedical Engineering at the University of British Columbia Vancouver campus is seeking one postdoctoral fellow to join our dynamic team in the AI in Medicine Lab (). This position is based in the School of Biomedical Engineering.
The successful candidate will work in the AI in Medicine Lab applying machine learning to cutting-edge problems in cancer genomics transcriptomics spatial transcriptomics and large-scale bioinformatics. This role focuses on developing and applying AI and deep learning techniques for analyzing high-dimensional omics data identifying predictive biomarkers and understanding cancer heterogeneity. Projects include modeling of bulk and single-cell transcriptomic profiles integrative multi-omics analysis and the fusion of molecular data with clinical and imaging features.
Organizational Status
The successful candidate will report to the Principal Investigator (Director of AI Research at OVCARE Dr. Ali Bashashati).
Responsibilities
- Designs and implements machine learning models for bulk and single-cell genomics and transcriptomics.
- Analyzes spatial transcriptomic datasets to uncover tissue organization and disease states.
- Develops integrative models combining genomics with pathology images or time-series data.
- Participates in large collaborative studies manuscript and grant writing.
- Mentors junior trainees and coordinate with clinicians and research partners (for senior roles).
Qualifications and requirements
- Ph.D. in bioinformatics computer science computational biology or a related field obtained within the last 5 years by the time of the appointment start date.
- Strong experience in deep learning applied to high-dimensional omics datasets.
- Familiarity with transcriptomic analysis tools (e.g. Seurat Scanpy DESeq2).
- Experience with spatial transcriptomics and multi-modal data integration is highly desirable.
- Proficient in Python R and ML libraries such as PyTorch or TensorFlow.
- Strong communication and collaboration skills; ability to work independently and as part of a team.
- Willingness to respect diverse perspectives including perspectives in conflict with ones own.
- Demonstrates a commitment to enhancing ones own awareness knowledge and skills related to equity diversity and inclusion.
How to apply
Important: Applications will only be reviewed if BOTH of the following steps are completed:
- Apply through the UBC system
- Fill out this mandatory form
The expected pay for this position is $70000 per year benefits.
The initial appointment will be for 16 months commencing on October 1 2025 or a mutually agreed upon date with a possibility for extension subject to satisfactory performance and funding availability.
Questions:
If you have any questions about the positions or the application processplease send contact & .
Review of applications will begin on September 29 2025 and continue until the position is filled. The anticipated start date for this position is October 1 2025 or upon a date to be mutually agreed.
We encourage applications from individuals of all backgrounds particularly those from equity-deserving groups. We are committed to creating inclusive spaces that foster innovation through diverse perspectives and experiences.
We invite applications from qualified candidates who share our commitment to employment equity and inclusive excellence and we welcome applications from candidates belonging to historically persistently or systemically marginalized groups: Indigenous (First Nation Mtis Inuit) Peoples racialized persons persons with disabilities women 2SLGBTQIA people and trans and non-binary people.
The University is committed to creating and maintaining an inclusive and equitable work environment for all members of its workforce. An inclusive work environment presumes an environment where differences are appreciated recognized and integrated into current structures planning and decision-making modes. Within this hiring process we are committed to creating an inclusive and equitable process for all candidates (including but not limited to people with disabilities). Confidential accommodations are available on request. If you have any questions regarding accommodations or accessibility during the recruitment and hiring process or for more information and support please visit UBCs Centre for Workplace Accessibility website at or contact the Centre at .
We acknowledge that UBCs Vancouver campus is located on the traditional ancestral and unceded territory of thexmkym (Musqueam)people. As scientists and engineers we are committed to responsible and respectful research practices on this land.
Employment Type
Full-Time
