Bioinformatics Engineer Oncology & Hematology (HF)

About SeqOne

SeqOne develops next-generation genomics software that turns complex sequencing data into clear actionable insights for clinicians and researchers. Our platforms power high-impact applications in oncology and rare disease with a strong focus on robustness reproducibility and speed. We are building a world-class team in Montpellier (FR) Paris (FR) and Cambridge (UK).

Why SeqOne

• Direct Impact: Your contributions will enhance customer experience and shape the evolution of our genomic products.
• Stimulating Environment: Passionate team innovative projects and a culture of transparency.
• Flexibility: Remote work options flexible hours and competitive benefits.
• Growth Opportunities: Internal career development continuous training and participation in scientific conferences.
• Soft Skills: Unstoppable Positivity (resilience and solution-first mindset) and Open Heart Hands-On (kindness combined with direct feedback).

Tasks

As a Bioinformatics Engineer you will design build and operate production-
grade bioinformatics applications and pipelines. You will partner with research and product teams to translate scientific needs into reliable software lead code quality efforts (reviews testing CI/CD) and help the team adopt best practices so that complex analyses become routine reproducible and scalable.

• Design and develop tools and pipelines for complex biological data.
• Maintain and improve existing applications while troubleshooting and resolving user issues.
• Optimize performance and reliability ensuring reproducible and robust results.
• Collaborate closely with scientific teams and contribute to publications and presentations.
• Lead code reviews enforce coding standards and secure practices.
• Track new methods/technologies and integrate them when relevant.
• Share knowledge through documentation creation training and guidance for both users and teammates.

Requirements

• We are seeking candidates with a Masters degree (Bac5) in Bioinformatics CS or a related field and at least 2 years of experience in bioinformatics development.
• Strong proficiency in Python UNIX/Linux and Bash is required.
• Experience with Workflow managers (Snakemake Nextflow).
• Familiarity with Git (branching PRs code reviews) as well as Docker for creating reproducible environnements is essential.
• Candidates should demonstrate clear communication skills the ability to effectively in a team autonomy in managing tasks and strong analytical problem-solving abilities.

Nice to have

• A PhD or equivalent research experience is a plus.
• Experience with CI/CD pipelines (GitLab CI GitHub Actions) is advantageous.
• Knowledge of environment managers such as pyenv poetry or virtual environments as well as experience with HPC or Cloud (SLURM AWS/GCP/Azure) is a strong asset.
• Proficiency in additional programming languages sur as R Perl Groovy Nim or Rust is welcomed.

Benefits

Bases in Montpellier / Paris or Cambridge
Fixed salary bonus free health insurance
This position offers flexible working arrangements including hybrid on-site or full remote options

Apply even if you dont think you meet all the qualificationswe may have another opening very soon!