Senior Research Associate, Computational Biology

An affiliate of Colossal is seeking a talented Senior Research Associate in computational biology with strong analytical skills to tackle challenging genotype-to-phenotype questions. The successful candidate will collaborate with scientists and engineers to perform bioinformatics analyses and integrate genomic epigenomic transcriptomic and proteomic datasets to support Colossal Biosciences de-extinction efforts. The candidate must have experience in bioinformatics or computational biology.

Preference will be given to candidates with a Masters degree who have experience analyzing and integrating diverse omics modalities (e.g. genomics epigenomics transcriptomics proteomics) using functional annotations and ontologies in the context of data-sparse or non-model organisms.

This position will be based on-site in Dallas TX. Relocation assistance is available.

Duties and Responsibilities:

• Run data analysis with biological data
• Run comparative functional and statistical genomics analysis
• Develop new tools in R/Python for data analysis and visualization
• Maintain electronic laboratory records and prepare reports or presentations to communicate findings to wet-bench biologists and leadership

Required Skills and Abilities:

• Two years of bioinformatics experience in the following areas: Functional Genomics / Multi-Omics Comparative Genomics Molecular Evolution or Applied Statistics in Genomics.
• Capable of leveraging knowledge across multiple levels of biological organization to validate the outputs of complex integrative analyses.
• Demonstrated 2 years of experience with scripting languages including but not limited to: Python R Perl Ruby Java and BASH.
• Ability to write and run custom bioinformatics scripts using existing published tools and occasionally tools developed to summarize the results in a digestible manner and deliver the information using established reporting procedures.
• Proficiency with handling large-scale genomic data in an HPC (SGE SLURM PBS) Linux and/or cloud environment (e.g. AWS Google Cloud Azure).
• Experience in using GIT version control software and maintaining well-documented reproducible notebooks and workflows.
• Ability to design and maintain databases (MySQL PostgreSQL MongoDB) and connect with visual platforms to curate and share data with non-bioinformatics team members.
• Self-motivated proactive and detail oriented along with the ability to perform well under pressure and deadlines
• Enthusiasm for learning new skills and taking on new responsibilities
• Strong written and oral communication skills as well as creative problem-solving skills
• Able to excel in a fast-paced startup environment and participate in team-driven science

Preferred Skills and Abilities:

• Executing rigorous analyses of diverse functional epigenomics approaches (e.g. RNA-seq and ATAC-seq) and integrating multi-omics datasets to aid in understanding of gene expression regulation
• Constructing interpreting and utilizing pangenome graphs whole genome alignments and gene homology relationships
• Familiarity in producing and curating genomic resources (e.g. reference genomes and gene annotations) for vertebrate organisms especially in non-traditional model systems.
• Experience calling germline and somatic sequence variants from high-coverage WGS low-coverage WGS with imputation and sequencing libraries from degraded or ancient DNA
• Understanding of precision gene editing technologies like CRISPR/Cas9 systems

Education and Experience:

• Bachelors with 2 years of experience or Masters in quantitative or basic science (computer science computational biology bioinformatics chemistry physics or mathematics preferred) is required

What Colossal Offers Full-Time Employees:

• Medical dental and vision coverage
• Excellent paid time off and company holidays so you can rest and recharge
• Flexible spending accounts (FSA)
• Company matched 401k retirement plan
• Paid parental leave at 100% salary for up to 12 weeks
• Education reimbursement
• An opportunity to help us return the Earth to a healthier state

The team at Colossal is committed colorful passionate intelligent collaborative creative experienced scientific and world-class. That sounds like a lot to fit into one building. Thats why we are spread out in several locations that include laboratories test facilities academic institutions libraries and offices.

Through it all however we maintain a culture of positivity hope happiness and belief that were doing something big. Something Colossal.

Colossal is proud to be an equal employment opportunity workplace. We welcome people from all backgrounds as well as celebrate and support diversity. We are committed to providing an inclusive environment of mutual respect that is free from discrimination and harassment so everyone can thrive.

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