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Scientist IISenior Scientist, Protein Sciences – Cell Binding Assays

Manifold Bio


Job Location:

Boston, MA - USA

Monthly Salary: $ 125000 - 175000
Posted: 11 July 2026 (30+ days ago)
Application Deadline: 8 October 2026
Vacancies: 1 Vacancy

Job Summary

Manifold Bio is a platform biotechnology company pioneering AI-guided protein design and massively multiplexed in vivo screening to unlock tissue-targeted medicines and organism-scale models of living systems. Using proprietary molecular barcoding technology we screen hundreds of thousands of protein designs simultaneously in living systems producing in vivo-validated datasets at a scale no one else can match. The datasets power our computational models which leads to better drug designs creating a flywheel that gets stronger with every campaign. Our team of protein engineers biologists and computational scientists worksacross this full stack to pursue programs both internally and with leading pharma companies.

Position

We are seeking an experienced and highly motivated Scientist for Cell Binding Assay Development to own the cell line and assay development process for discovery and characterization of biotherapeutic candidates. This is a senior hands-on role at the intersection of molecule discovery and therapeutic evaluation you will be the single point of accountability for the ability to understand candidate function in translationally relevant contexts.

The ideal candidate brings deep expertise in mammalian cell line development and engineering bioassay development and protein-protein interactions. You are comfortable in a fast-moving startup and flourish in driven innovative collaborative environments. You are comfortable managing timelines and priorities and communicating amongst a multidisciplinary team.

Responsibilities

  • Design and generate stable and transient cell lines expressing target antigens (including membrane receptors and other challenging targets) to support antibody discovery and characterization campaigns.
  • Develop and maintain cell lines optimized for whole-cell panning and display-based selection workflows.
  • Develop optimize and qualify cell-based binding assays (flow cytometry / FACS cell ELISA and equilibrium binding formats) to characterize antibody-type molecules across a range of formats.
  • Adapt assays to higher-throughput formats to increase screening capacity across discovery campaigns.
  • Work at the cutting edge of innovation in cell engineering to workflows for characterization of binder libraries.

Required Qualifications

  • PhD in cell biology immunology biochemistry molecular biology or a related field with 3 years of relevant post-graduate experience (or MS with 8 years) in a biotech/pharma discovery setting.
  • Expertise in mammalian cell engineering and cell line development. .
  • Demonstrated experience with FACS and general assay development.
  • Strong practical knowledge of antibody characterization concepts on-cell affinity/avidity specificity and selectivity epitope binning and competition/blocking assays.
  • Proven ability to work independently design rigorous experiments troubleshoot complex problems and interpret data with sound scientific judgment.
  • Track record of collaborating cross-functionally and communicating results clearly to project teams.

Preferred Qualifications

  • Direct experience with whole-cell panning and display-based selection (phage and/or yeast display) including negative-selection/depletion strategies against native membrane targets.
  • Familiarity with a range of antibody formats
  • Experience with orthogonal biophysical binding methods (SPR/BLI e.g. Biacore or Octet) to complement cell-based data.
  • Experience adapting assays to higher-throughput or automated platforms.

If youre excited to use unique protein technologies to shape an innovative drug development strategy build meaningful industry partnerships and contribute directly to our mission of advancing breakthrough treatments please apply!

Base Salary Range: $125000 - $175000

This reflects the typical offer range for this role based on experience role scope and internal equity. Final compensation decisions are made using a consistent leveling framework and consider the candidates experience interview performance and expected impact.

This role is eligible for:

  • Annual performance-based target bonus
  • Stock options
  • Comprehensive medical dental and vision coverage
  • 401(k) plan
  • Flexible paid time off and holidays
  • Perks including on-site gym onsite lunch and commuter support

Our compensation ranges are reviewed annually to ensure alignment with market trends and internal equity.

We value different experiences and ways of thinking and believe the most talented teams are built by bringing together people of diverse cultures genders and backgrounds.


Required Experience:

Senior IC


About Company

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Our innovative technology combines protein barcoding and high-throughput in vivo capabilities to design drugs with more precise molecular testing.

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