Senior Cloud Engineer

MSD


Job Location:

Prague - Czech Republic

Monthly Salary: Not Disclosed
Posted on: 2 days ago
Vacancies: 1 Vacancy

Job Summary

Job Description

The Position

The Advanced Scientific Compute (ASC) team builds and operates the cloud HPC platform that underpins computational research at Our Company. AI/ML workloads are rapidly migrating to cloud and this role exists to accelerate that transition bringing dedicated AI/ML expertise into the HPC engineering team to strengthen integrations with AI pipelines enable agentic AI capabilities for self-service and drive better insights from scientific compute data.


What will you do

  • Design deploy and operate cloud HPC infrastructure on AWS (ParallelCluster Slurm S3 networking) supporting scientific research workloads.
  • Lead integration of HPC environments with AI/ML pipelines enabling training inference and orchestration workloads to run efficiently alongside traditional HPC jobs.
  • Architect and implement agentic AI capabilities (e.g. LLM-based self-service tooling automated job management) to improve researcher experience and reduce manual support overhead.
  • Contribute to platform observability cost optimisation and capacity planning for cloud HPC environments.
  • Partner with HPC Application Support and Client Support Engineering to translate researcher needs into platform improvements.
  • Support onboarding and enablement of research teams adopting cloud-native and AI-augmented workflows.
  • Participate in on-call rotation and incident response for HPC platform availability.


Qualifications Skills & Experience Required

  • 5 years of cloud engineering experience with hands-on AWS expertise (EC2 S3 VPC IAM EFS/FSx).
  • Demonstrated experience with HPC environments job schedulers (Slurm PBS or equivalent) parallel filesystems MPI workloads.
  • Proficiency in infrastructure-as-code (Terraform or CloudFormation) and scripting (Python Bash).
  • Experience integrating or operating ML workloads in cloud environments (training pipelines model serving batch inference).
  • Strong systems thinking able to diagnose performance networking and storage bottlenecks in distributed compute environments.
  • Comfortable working in a regulated enterprise environment with change management processes.


Nice to have

  • Hands-on experience with agentic AI frameworks (e.g. LangChain CrewAI or similar) or LLM-based tooling.
  • Familiarity with AWS ParallelCluster or equivalent cloud HPC orchestration platforms.
  • Experience in pharma biotech or other scientific computing domains.
  • Knowledge of container-based HPC workflows (Docker Singularity/Apptainer).


What we offer

  • Exciting work in a great team global projects international environment.
  • Opportunity to learn and grow professionally within the company globally.
  • Hybrid working model flexible role pattern (e.g. even 80% full-time is possible in justified cases).
  • Pension and health insurance contributions.
  • Internal reward system plus referral programme.
  • 5 weeks annual leave 5 sick days 15 days of certified sick leave paid above statutory requirements annually 40 paid hours annually for volunteering activities 12 weeks of parental contribution.
  • Cafeteria for tax free benefits according to your choice (meal vouchers sport culture health travel etc.) Multisport Card.
  • Vodafone Raiffeisen Bank and Foodora discount programmes.
  • Up-to-date laptop and iPhone.
  • Parking in the garage showers refreshments massage chairs library music corner.
  • Competitive salary incentive pay and many more.


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Required Skills:

Amazon Web Services (AWS) Amazon Web Services (AWS) Availability Management Biodesign Bioinformatics Biopharmaceutical Industry Biopharmaceuticals Biopharmaceutics Capacity Management Change Controls Change Management Cloud Engineering Design Applications Drug Discovery Process High Performance Computing (HPC) Incident Management Information Management Information Technology (IT) Infrastructure Infrastructure As Code (IaC) Intelligent Agents IT Service Management (ITSM) Pharmaceutical Biology Release Management Software Development Software Development Life Cycle (SDLC) 2 more

Preferred Skills:

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Current Contingent Workers apply HERE

Search Firm Representatives Please Read Carefully
Merck & Co. Inc. Rahway NJ USA also known as Merck Sharp & Dohme LLC Rahway NJ USA does not accept unsolicited assistance from search firms for employment opportunities. All CVs / resumes submitted by search firms to any employee at our company without a valid written search agreement in place for this position will be deemed the sole property of our company. No fee will be paid in the event a candidate is hired by our company as a result of an agency referral where no pre-existing agreement is in place. Where agency agreements are in place introductions are position specific. Please no phone calls or emails.

Employee Status:

Regular

Relocation:

No relocation

VISA Sponsorship:

No

Travel Requirements:

No Travel Required

Flexible Work Arrangements:

Hybrid

Shift:

Not Indicated

Valid Driving License:

No

Hazardous Material(s):

n/a

Job Posting End Date:

07/15/2026

*A job posting is effective until 11:59:59PM on the day BEFOREthe listed job posting end date. Please ensure you apply to a job posting no later than the day BEFORE the job posting end date.


Required Experience:

Senior IC

Job DescriptionThe PositionThe Advanced Scientific Compute (ASC) team builds and operates the cloud HPC platform that underpins computational research at Our Company. AI/ML workloads are rapidly migrating to cloud and this role exists to accelerate that transition bringing dedicated AI/ML expertise...

About Company

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Merck & Co., Inc., Kenilworth, New Jersey, USA is known as “Merck” in the United States, Canada & Puerto Rico. We are known as “MSD” in Europe, Middle East, Africa, Latin America & Asia Pacific. We are a global biopharmaceutical leader with a diverse portfolio of prescription medicine ... View more

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